Assessment of Genetic Variation among Three Different Flower Colour Morphotypes of Tecomella undulata Using Start Codon Targeted Markers
DOI:
https://doi.org/10.36808/if/2025/v151i4/170455Keywords:
Conservation, Genetic Diversity, Morphotypes, Rohida, Start codon targeted markers.Abstract
Tecomella undulata commonly known as Rohida is an important timberyielding tree species of arid and semi-arid regions. It has become victim of overexploitation for its high quality timber and medicinal values because of which the species is categorized under threatened plants. Three different flower colour morphotypes viz., yellow, red and orange were recorded in the species. Flowers of Rohida are recognised as state flower of Rajasthan. To investigate the variation exists among these three different flower colour morphotypes of Rohida, Start Codon Targeted Polymorphism marker system was used. In the present study, 63 SCoT primers were tested, out of which 14 primers were found to be polymorphic generating 1045 scorable bands. Scorable bands per primer were obtained in the range of 20-118. The PIC and RP values of the primers ranged between 0.27-0.45 and 2.80-16.86. The estimated Jaccard similarity coefficient ranged from 0.038 to 0.579. The dendrogram constructed using Jaccard's coefficient resulted into two clusters, the first cluster including yellow morphotypes and the second cluster including red and orange flower colour morphotypes.
References
Amirmoradi B., Talebi R. and Karami E. (2012). Comparison of genetic variation and differentiation among annual Cicer species using start codon targeted (SCoT) polymorphism DAMD-PCR and ISSR markers, Plant Syst Evol., 298: 1679–1688. DOI: https://doi.org/10.1007/s00606-012-0669-6
Bhandari M.M. (1990). Flora of Indian desert. MPS Repros Jodhpur, India. pp. 42
Bhau B.S., Negi M.S., Jindal S.K., Singh M. and Laxmikumaran M. (2007). Assessing genetic diversity of Tecomella undulata (Sm.) - An endangered tree species using Amplified fragment length polymorphisms- based molecular markers, Current Science, 93: 67-72.
Cabo S., Ferreira L., Carvalho A., Martins-Lopes P., Martín A. and Lima-Brito J.E. (2014). Potential of Start Codon Targeted (SCoT) markers for DNA fingerprinting of newly synthesized tritordeums and their respective parents, J Appl Genet., 55: 307–312. DOI: https://doi.org/10.1007/s13353-014-0211-3
Chhajer S., Juktani A.K., Bhatt R.K. and Kalia R.K. (2017). Start codon targeted (SCoT) polymorphism-based genetic relationships and diversity among populations of Tecomella undulata (Sm.) Seem—an endangered timber tree of hot arid regions. Tree Genetics and Genomes, 13(4): 1. DOI: https://doi.org/10.1007/s11295-017-1169-1
Chhajer S., Juktani A.K., Bhatt R.K. and Kalia R.K. (2018). Genetic Diversity studies in endangered desert teak [Tecomella undulata (Sm) Seem] using arbitrary (RAPD), semi-arbitrary (ISSR) and sequence based (nuclear rDNA) markers. Trees, 32(4):1083–1101. DOI: https://doi.org/10.1007/s00468-018-1697-9
Chen F.Y. and Liu J.H. (2014). Germplasm genetic diversity of Myrica rubra in Zhejiang Province studied using inter-primer binding site and start codon-targeted polymorphism markers, Sci Hortic., 170: 169–175. DOI: https://doi.org/10.1016/j.scienta.2014.03.010
Daneva V., Beniwal R.S., Kajla S., Poonia A.K., Kumar M. and Kajal (2023). Assessment of genetic diversity in Tecomella undulata by using ISSR markers, Vegetos, https://doi.org/10.1007/s42535-023-00571-y DOI: https://doi.org/10.1007/s42535-023-00571-y
Collard B.C. and Mackill D.J. (2009). Start Codon Targeted (SCoT) polymorphism: A simple, novel DNA marker technique for generating gene-targeted markers in plants, Plan Mol Biol Rep., 27: 86–93. DOI: https://doi.org/10.1007/s11105-008-0060-5
Gorji A.M., Matyas K.K., Dublecz Z., Decsi K., Cernak I., Hoffmann B., Taller J. and Polgar Z. (2012). In vitro osmotic stress tolerance in potato and identification of major QTLs, Am J Potato Res., 89: 453–464. DOI: https://doi.org/10.1007/s12230-012-9268-x
Gorji A.M., Poczai P., Polgar Z. and Taller J. (2011). Efficiency of arbitrarily amplified dominant markers (SCoT, ISSR and RAPD) for diagnostic fingerprinting in tetraploid potato, Ann J Potato Res., 88: 226–237. DOI: https://doi.org/10.1007/s12230-011-9187-2
Guo D.L., Zhang J.Y. and Liu C.H. (2012). Genetic diversity in some grape varieties revealed by SCoT analyses, Mol Biol Rep., 39: 5307–5313. DOI: https://doi.org/10.1007/s11033-011-1329-6
Kritikar K.R. and Basu B.D. (1993). Indian medicinal plants. International Book Distributor, Dehradun.
Kumar A., Ram H., Sharma S.K., Rao S.R. (2008). Comparative meiotic chromosome studies in nine accessions of Tecomella undulata (Sm.) Seem., threatened tree of Indian desert, Silvae Genet., 57: 301-306 DOI: https://doi.org/10.1515/sg-2008-0045
Luo C., He X.H., Chen H., Ou S.J. and Gao M.P. (2010). Analysis of diversity and relationships among mango cultivars using Start Codon Targeted (SCoT) markers, Biochem Syst Ecol., 38:1176–1184. DOI: https://doi.org/10.1016/j.bse.2010.11.004
Meena D. and Kant T. (2018). Optimization of DNA Extraction Protocol for RAPD and ISSR Analysis in Tecomella undulata, J Phytol Res., 31(1&2): 23-28.
Meena D. and Kant T. (2022). Assignment of genotypes to populations and assessment of genetic diversity of Tecomella undulata trees of Rajasthan (India) using ISSR markers, Vegetos (An International Journal of Plant Research & Biotechnology), 35(2): 317-329. DOI: https://doi.org/10.1007/s42535-021-00294-y
Mohammadi S.A. and Prasanna B.M. (2003). Analysis of Genetic Diversity in Crop Plants-Salient Statistical Tools and C o n s i d e r a t i o n s . C r o p S c i e n c e , 4 3 : 1 2 3 5 - 1 2 4 8 . https://doi.org/10.2135/cropsci2003.1235 DOI: https://doi.org/10.2135/cropsci2003.1235
Mulpuri S., Muddanuru T. and Francis G. (2013). Start codon targeted (SCoT) polymorphism in toxic and non-toxic accessions of Jatropha curcas L. and development of a codominant SCAR marker. Plan Sci., 207: 117–127. DOI: https://doi.org/10.1016/j.plantsci.2013.02.013
Nadkarni K.M. (2000). Indian Materia Medica, Popular Prakashan, Mumbai.
Negi R.S., Sharma M.K., Sharma K.C., Kshetrapal S., Kothari S.L. and Trivedi P.C. (2011). Genetic Diversity and Variations in the Endangered Tree (Tecomella undulata) in Rajasthan, IJFALS, 1(1): 50-58.
Pandey R.P., Shetty B.V. and Malhotra S.K. (1983). A preliminary census of rare and threatened plants of India. In:
Jain, S.K. and Rao, R.R., (eds) An assessment of threatened plants of India: BSI Howarh pp. 55–62
Shetty B.V. and Singh V. (1987). Flora of Rajasthan Flora of India Series 2. BSI, Howarh.
Tripathi J.P.M. and Jaimini S.N. (2002). Floral and reproductive biology of Rohida (Tecomella undulata (Sm.) Seem.), Indian Journal of Forestry, 25: 341–343. DOI: https://doi.org/10.54207/bsmps1000-2002-SPT7TE
Que Y.X., Pan Y.B., Lu Y.H., Yang C., Yang Y.T., Huang N. and Xu L.P. (2014). Genetic analysis of diversity within a Chinese local sugarcane germplasm based on start codon targeted polymorphism, BioMed Res, https://doi.org/10.1155/2014/468375 DOI: https://doi.org/10.1155/2014/468375
Xiong F.Q., Zhong R.C., Han Z.Q., Jiang J., He L.Q., Zhuang W.J. and Tang R.H. (2011). Start codon targeted polymorphism for evaluation of functional genetic variation and relationships in cultivated peanut (Arachis hypogea L.) genotypes, Mol. Biol Rep., 38: 3487-3494. DOI: https://doi.org/10.1007/s11033-010-0459-6
Wendel J.F. and Weeden N.F. (1989). Visualization and interpretation of plant isozymes, 18: In Isozymes in Plant Biology, Soltis, D.E. and Soltis, P.S. (eds.) Chapman and Hall, London DOI: https://doi.org/10.1007/978-94-009-1840-5_2
Downloads
Downloads
Published
How to Cite
Issue
Section
License
Unless otherwise stated, copyright or similar rights in all materials presented on the site, including graphical images, are owned by Indian Forester.